OBO Foundry dashboard analysis¶

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/tmp/ipykernel_5545/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

Turtle            28
RDF/XML Syntax    27
unknown            7
OWL/XML Syntax     1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 56 2981.968254 12221.985126 0.0 91.5 557.0 1918.0 96738.0
Declaration 56 694.047619 1505.175260 0.0 64.0 316.0 716.5 11135.0
SubClassOf 53 832.507937 3033.568626 0.0 14.0 147.0 622.5 23882.0
ObjectPropertyRange 50 39.555556 71.027886 0.0 8.5 24.0 44.0 520.0
ObjectPropertyDomain 49 37.793651 70.930943 0.0 6.0 22.0 43.0 517.0
DataPropertyRange 46 13.873016 27.217459 0.0 0.0 5.0 11.0 170.0
InverseObjectProperties 43 11.523810 22.423243 0.0 0.0 2.0 9.0 126.0
SubObjectPropertyOf 42 48.619048 100.836410 0.0 0.0 12.0 60.0 709.0
DataPropertyDomain 40 13.746032 37.258456 0.0 0.0 2.0 6.5 235.0
ClassAssertion 38 138.857143 474.666228 0.0 0.0 2.0 20.5 3053.0
DisjointClasses 37 212.174603 1545.478082 0.0 0.0 2.0 17.5 12277.0
EquivalentClasses 33 133.253968 774.035132 0.0 0.0 1.0 32.0 6147.0
SubDataPropertyOf 29 9.777778 31.914424 0.0 0.0 0.0 7.0 242.0
SubAnnotationPropertyOf 26 6.269841 13.355205 0.0 0.0 0.0 8.0 85.0
TransitiveObjectProperty 25 3.571429 7.356617 0.0 0.0 0.0 4.5 38.0
FunctionalObjectProperty 23 2.238095 4.106306 0.0 0.0 0.0 3.5 18.0
FunctionalDataProperty 22 1.984127 4.936670 0.0 0.0 0.0 2.0 26.0
InverseFunctionalObjectProperty 20 1.174603 2.562381 0.0 0.0 0.0 1.0 12.0
SymmetricObjectProperty 19 2.365079 5.377077 0.0 0.0 0.0 1.0 32.0
AnnotationPropertyRangeOf 18 2.777778 6.421849 0.0 0.0 0.0 1.0 30.0
ObjectPropertyAssertion 16 197.984127 1056.070753 0.0 0.0 0.0 1.0 8133.0
IrrefexiveObjectProperty 16 2.603175 6.102722 0.0 0.0 0.0 0.5 22.0
DataPropertyAssertion 13 109.698413 506.940209 0.0 0.0 0.0 0.0 3617.0
AsymmetricObjectProperty 13 2.190476 5.278860 0.0 0.0 0.0 0.0 20.0
SubPropertyChainOf 12 3.952381 17.078971 0.0 0.0 0.0 0.0 120.0
DisjointUnion 12 7.539683 22.459875 0.0 0.0 0.0 0.0 116.0
EquivalentObjectProperties 8 1.079365 4.756325 0.0 0.0 0.0 0.0 36.0
AnnotationPropertyDomain 7 0.206349 0.826160 0.0 0.0 0.0 0.0 6.0
DisjointObjectProperties 6 0.634921 2.529195 0.0 0.0 0.0 0.0 17.0
Rule 6 1.015873 3.912313 0.0 0.0 0.0 0.0 25.0
DifferentIndividuals 6 0.603175 3.240568 0.0 0.0 0.0 0.0 25.0
ReflexiveObjectProperty 4 0.079365 0.326348 0.0 0.0 0.0 0.0 2.0
SameIndividual 3 2.253968 14.995664 0.0 0.0 0.0 0.0 118.0
EquivalentDataProperties 1 0.079365 0.629941 0.0 0.0 0.0 0.0 5.0
NegativeObjectPropertyAssertion 1 0.015873 0.125988 0.0 0.0 0.0 0.0 1.0
DatatypeDefinition 1 0.015873 0.125988 0.0 0.0 0.0 0.0 1.0
DisjointDataProperties 1 0.031746 0.251976 0.0 0.0 0.0 0.0 2.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 56 3250.809524 10638.929115 0.0 110.0 894.0 2456.0 78469.0
ObjectUnionOf 37 13.222222 21.809619 0.0 0.0 2.0 13.0 88.0
ObjectAllValuesFrom 33 18.000000 32.981911 0.0 0.0 1.0 18.5 162.0
ObjectSomeValuesFrom 32 357.904762 2097.101331 0.0 0.0 1.0 88.0 16614.0
ObjectIntersectionOf 27 126.492063 784.382948 0.0 0.0 0.0 16.0 6217.0
ObjectExactCardinality 24 3.968254 10.735783 0.0 0.0 0.0 3.0 66.0
DataExactCardinality 22 2.460317 4.406101 0.0 0.0 0.0 3.5 18.0
ObjectComplementOf 16 4.587302 22.939355 0.0 0.0 0.0 0.5 179.0
DataAllValuesFrom 15 0.809524 1.803734 0.0 0.0 0.0 0.0 9.0
DataHasValue 14 24.888889 73.334653 0.0 0.0 0.0 0.0 494.0
ObjectMinCardinality 14 1.142857 3.115296 0.0 0.0 0.0 0.0 17.0
DataSomeValuesFrom 13 1.301587 4.459983 0.0 0.0 0.0 0.0 33.0
ObjectHasValue 12 6.793651 31.919838 0.0 0.0 0.0 0.0 211.0
ObjectMaxCardinality 11 15.000000 112.604503 0.0 0.0 0.0 0.0 894.0
ObjectOneOf 8 4.825397 34.245574 0.0 0.0 0.0 0.0 272.0
DataMinCardinality 6 0.285714 1.650304 0.0 0.0 0.0 0.0 13.0
DataMaxCardinality 6 1.587302 7.856854 0.0 0.0 0.0 0.0 59.0
ObjectHasSelf 1 0.015873 0.125988 0.0 0.0 0.0 0.0 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
17 FOAF 0.318 0.333 0.302
38 PROVO 0.316 0.504 0.127
31 OBO 0.314 0.549 0.079
19 IAO 0.296 0.593 0.000
32 OEO 0.285 0.571 0.000
37 PMDCO 0.275 0.549 0.000
13 EMMO_crystallography 0.275 0.549 0.000
57 nfdicore 0.275 0.549 0.000
8 EMMO 0.275 0.549 0.000
39 QUDT 0.275 0.549 0.000
4 CHAMEO 0.275 0.549 0.000
15 EMMO_mechanical_testing 0.264 0.527 0.000
42 SEMMD 0.252 0.504 0.000
12 EMMO_atomistic 0.252 0.504 0.000
3 CCO 0.252 0.504 0.000
1 BWMD-DOMAIN 0.252 0.504 0.000
11 EMMO_Datamodel 0.252 0.504 0.000
14 EMMO_mappings 0.252 0.504 0.000
2 BWMD-MID 0.252 0.504 0.000
51 m4i 0.241 0.482 0.000
41 SAREF 0.241 0.482 0.000
21 MAMBO 0.234 0.467 0.000
28 NPO 0.234 0.467 0.000
16 EMMO_microstructure 0.234 0.467 0.000
0 AMONTOLOGY 0.234 0.467 0.000
44 SO 0.234 0.467 0.000
47 UO 0.234 0.467 0.000
45 SP 0.234 0.467 0.000
6 DEB 0.234 0.467 0.000
22 MDO 0.234 0.467 0.000
27 MaterialsMine 0.222 0.444 0.000
55 mvc 0.222 0.444 0.000
7 DISO 0.222 0.444 0.000
30 OA 0.222 0.444 0.000
52 mat 0.222 0.444 0.000
18 GPO 0.222 0.444 0.000
26 MatOnto 0.222 0.444 0.000
25 MSEO 0.222 0.444 0.000
24 MOL_TENSILE 0.219 0.438 0.000
20 LPBFO 0.219 0.438 0.000
59 opmw 0.200 0.400 0.000
48 WILD 0.200 0.400 0.000
56 mwo 0.200 0.400 0.000
35 P-Plan 0.200 0.400 0.000
60 periodictable 0.200 0.400 0.000
46 SSN 0.189 0.378 0.000
34 OSMO 0.189 0.378 0.000
43 SKOS_MDO 0.189 0.378 0.000
61 ssos 0.189 0.378 0.000
49 bmo 0.189 0.378 0.000
23 MOL_BRINELL 0.189 0.378 0.000
40 QUDV 0.167 0.333 0.000
53 matinfo 0.167 0.333 0.000
58 ontorule 0.155 0.311 0.000
36 PATO 0.000 0.000 0.127
10 EMMO_BattINFO 0.000 0.000 0.000
62 vimmp 0.000 0.000 0.000
54 metal-alloy 0.000 0.000 0.000
29 NanoMine 0.000 0.000 0.000
50 enanomapper 0.000 0.000 0.000
33 OM 0.000 0.000 0.000
5 CIF-core 0.000 0.000 0.000
9 EMMO_BVC 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 63.0 0.200508 0.089521 0.0 0.189 0.222 0.252 0.318
score_dash 63.0 0.392683 0.173098 0.0 0.378 0.444 0.504 0.593
score_impact 63.0 0.010079 0.044595 0.0 0.000 0.000 0.000 0.302

OBO dependency graph